What is the cause of Epilepsy?

What causes Epilepsy?

We have previously defined a seizure as follows:

A Seizure is a brief, uncontrolled surge of electricity resembling an electrical storm.

A seizure is an electrical storm inside the brain.

(Read more here: What is a seizure?)

and Epilepsy as follows:

Epilepsy is a tendency of the brain to have Unprovoked seizures.

If your brain keeps on having seizures, then doctors conclude it has a TENDENCY to have seizures. This tendency is called Epilepsy.

(Read more here: What is Epilepsy?)

But, what causes the Brain to develop this increased tendency? Is Epilepsy something that you are born with? Is it something that happens due to injury to your Brain?

Let us talk about these causes.

Is there a single cause for Epilepsy?


The cause for Epilepsy is different in different people. Epilepsy may be caused by Abnormal Development of our bodies and Brain before we are born, or by injuries to our Brain after birth.

For the sake of understanding, allow me to divide the causes into 5 groups:

  1. Abnormal Development – producing abnormal brain cells
  2. Abnormal Development – causing chaotic brain structure
  3. Abnormal Development – causing chemical (metabolic) problems
  4. Brain injury due to incidents after birth
  5. Auto-Immunity

The first 3 categories are due to abnormal genes.

As we start to know more and more about seizures, we are beginning to identify more and more gene abnormalities that can cause Epilepsy. E.g. We now know that most cases of “Dravet Syndrome” are caused by SCN1A gene abnormalities which in turn produce a problem with sodium channels on cells (Mechanism 1).

Mechanism 1: Abnormal Development – producing abnormal brain cells

Our Brain is made up of millions of minute cells. Each one of our cells has little tunnels called “Channels”. These tunnels act as gatekeepers. They can let substances such as potassium and Sodium into the cell, and can also throw these substances out of the cell.

Abnormal tunnels in the walls of cells can cause Epilepsy.

A problem with the “Channels” on the cell is called a “Channelo-Pathy”. The word “pathy” means disorder.

If there is a problem with one of these channels (Channelo-pathy), the cell can become excitable. Most commonly, the problem is with the channel for Sodium.

For example, if there is a problem with the channel that regulates Sodium, too much Sodium can enter the cell, and the cell can start throwing small surges of electricity. A lot of cells throwing minute surges may cause a HUGE SURGE of electricity in the Brain – a Seizure.

We are discovering that many of our patients have Epilepsy due to a Channelopathy. We are discovering new channelopathies every year.

Have a look at the short list below – this is just to illustrate the concept and not for memorization. If you’re interested, you can see a more comprehensive list by clicking here (Spillane et al.).

Substance affectedGeneEpilepsy Syndrome
SodiumSCN1ADravet Syndrome
SodiumSCN2ABenign Familial Infantile Seizures
PotassiumKCN-Q2 & 3Benign Familial Neonatal Convulsions
PotassiumKCNT1Malignant Migratory Partial Seizures of Infancy
CalciumCACNA1AChildhood Absence Epilepsy
Chloride/Calcium channelsGABRA1, EFHC1, CACNB3, CLCN2 & othersJuvenile Myoclonic Epilepsy
AcetylcholineCHRNA2, CHRNA4, CHRNB2Autosomal Dominant Frontal Lobe Epilepsy

Here is an excellent paper that describes Epilepsy genes causing channelopathy [Bartolini et al 2020].

Mechanism 2: Abnormal Development – causing chaotic brain structure

The outer surface of the Brain is called the “Cortex”.

  • The Cortex consists of 3-6 sheets of cells placed on top of each other, like a set of bedsheets on top of each other.
  • The outer surface is also folded, like bedsheets with a lot of creases. These folds are called “Gyri”.
  • Below the Cortex and well separated from it is a bunch of wires, called the “White Matter.”


This exquisite arrangement is critical for proper brain functioning. If this arrangement does not correctly form before birth, abnormal electrical connections can be created, like two electrical wires crisscrossing each other. The resulting short circuit can cause electrical sparks/surges in that part. These surges can then spread throughout the Brain producing a HUGE SURGE – a seizure.

Let us briefly discuss some of these problems with the structure of the Brain:

1.Lissencehaply / Pachygyria:

“Lissen” means Smooth & “Cephaly” refers to the Brain = Smooth Brain

Paychy means “few” & “Gyri” are the folds of the Cortex = Few Folds


In both these conditions, the number of folds of the Cortex (the wrinkles) are reduced. Therefore the surface of the Brain looks smoother than usual.

2. PolyMicroGyria:

“Poly” means many, “Micro” means small, & “Gyri” are the folds of Cortex = Many small folds

In this condition, there are too many folds of the Cortex! Therefore the surface of the Brain looks exceptionally wrinkled.

3. Focal Cortical Dysplasia & Nodular Heterotopia:

While the Brain is developing, the cells of the Cortex may not form properly and get arranged haphazardly. Usually, this involves only a part of the Brain (Focal) rather than the entire Brain. The Latin word for abnormal formation is “Dysplasia”.  Therefore this disease is called “Focal Cortical Dysplasia” or FCD for short.

Frequently these abnormal cells get stuck in the mass of cells called the “White matter” instead of reaching the Cortex. They formed nodules below the Cortex. Heterotopia in Latin means “Abnormal Movement”. Therefore, this disease is called “Nodular Heterotopia.”

As can be imagined,  “Focal Cortical Dysplasia” & “Nodular Heterotopia” commonly occur together, but each one can also happen separately.

4. Tuberous Sclerosis & Cortical Tubers:

Tuberous Sclerosis is a disease in which patients have white patches on the skin and nail and eye abnormalities, in addition to seizures. In this disease, the Brain has multiple abnormalities. One of them is strange blobs of cells in the Cortex with scarring and calcification which produces large bumps on the surface of the Brain. these are called “Cortical Tubers.”

5. Mesial Temporal Sclerosis:

The temporal lobes are the part of the Brain below the ears. Sometimes, the inner side of this part develops scarring.

In Latin, the inner side is called “Mesial” & scarring is called “Sclerosis”. Therefore, this is called “Mesial Temporal Sclerosis”.

6. Abnormal Development of blood vessels:

For example, in Sturge-Weber syndrome, patients have a stain on their face due to too many blood vessels. But below that lesion, they also have a severe overgrowth of blood vessels on the brain surface. Below this overgrowth of vessels, parts of the Brain may develop scarring and calcium deposits.

A second example is that of a cavernous malformation. A cavernous malformation is a cluster of small blood vessels, that leaks blood into the surrounding brain. The iron in blood stains the surrounding Brain and can irritate it, producing seizures.

A third example is that of an AVM.


The genes causing some of these problems (e.g. Tuberous Sclerosis) have been known for a long time. We are just starting to discover the genes causing some of the other problems like Focal Cortical Dysplasia.

GeneAbnormal Brain structure
DCX, Tuba1A, LisiLissencephaly
ADGRG-1 & Tubb2BPolymicrogyria
mTOR genes (DEPDC5, PTEN, NPRL2&3)Focal Cortical Dysplasia
Filamin-1Nodular Heterotopia
TSC1 & TSC2Tuberous Sclerosis
SCN1A, SCN1B, CNTNAP2Mesial Temporal Sclerosis
CCM1/KRIT-1, CCM2, CCM3Cavernoma

Mechanism 3: Abnormal Development – causing chemical (metabolic) problems

Some diseases cause problems with chemicals in our body. E.g. some diseases may cause abnormal storage of harmful substances. These harmful substances can harm the brain, and in turn, can cause seizures.

Chemical imbalances in the body can cause Epilepsy. This is relatively rare.

There is a vast number of such diseases. I can’t describe all of them here, so I will just attach a nice table from an authoritative technical article on the subject. You can click on the image for a larger version. You can read the full paper here (Sharma et al. 2017).


Allow me to make a few points before I close this topic:

  • In most patients, Epilepsy is not due to a metabolic problem.
  • Most doctors will test for metabolic problems only if there are suspicious features such as facial abnormalities, family history of Epilepsy or consanguinity.
  • Even then, it is essential to suspect these disorders because the specific treatment of these diseases (e.g. ketogenic diet in GLUT-1 deficiency & Pyridoxine in pyridoxine deficiency) can change the life of the individual.

If your doctor suspects such a condition, he will probably order tests in a step-wise fashion. An initial set of such tests is given below. For understanding the rest of the tests, you may want to read the excellent original paper here (Karnebeek et al. 2018).


Mechanism 4: Brain Injury after Birth

Any injury to the brain after birth can lead to scar tissue formation. This scar tissue and the resulting cross-connections can be a source of Seizures. Also, iron in the blood is highly irritating to the Brain – if iron comes in contact with Brain, it can irritate the Brain into having a Seizure.

Some examples:
– Brain tumours including Meningomas, Glioblastomas etc
– After a brain infarct / Stroke
– After bleeding inside or on the surface of the Brain (haemorrhage)
– After motor vehicle accidents

Mechanism 5: Autoimmunity

We are just starting to learn more about this phenomenon as a cause for Epilepsy. I will talk about this briefly because at this time this is considered to be a rare cause of Epilepsy.

Sometimes, our immune system makes a mistake. It thinks that parts of our Brain are bacteria/viruses. Therefore, the immune system begins to attack these parts, which are frequently on the surface of cells.

These parts on the surface of cells are called “Receptors”. Depending on what kind of Receptors the autoimmune condition may be called “NMDA-receptor Encephalitis” or “AMPA receptor encephalitis” and so on – Complete list here: (Rossling et al. 2020)

Autoimmunity and inflammation may also play a role in all of the causes described so far – but that is a story for another day.

Suppressing the immune system (for example with steroids) may be very helpful in some of these people.




Caution: This information is not a substitute for professional care. Do not change your medications/treatment without your doctor's permission.
Dr. Siddharth Kharkar

Dr. Siddharth Kharkar

Dr. Siddharth Kharkar has been recognized as one of the best neurologists in Mumbai by Outlook India magazine and India today Magazine. He is a board certified (American Board of Psychiatry & Neurology certified) Neurologist.

Dr. Siddharth Kharkar is a Epilepsy specialist in Mumbai & Parkinson's specialist in Mumbai, Maharashtra, India.

He has trained in the best institutions in India, US and UK including KEM hospital in Mumbai, Johns Hopkins University in Baltimore, University of California at San Francisco (UCSF), USA & Kings College in London.

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NeuroPlus Epilepsy & Parkinson's Clinic - Dr. Kharkar IconNeuroPlus Epilepsy & Parkinson's Clinic - Dr. Kharkar

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